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Documentation
Requesting An Account
Get Started
Common Terms
HPC Resources
Quick Start
Theory of HPC
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Overview of threads, cores, and sockets in Slurm for HPC workflows
Cluster Specifications
Node Features (Constraints)
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NVLink and NVSwitch
Node List
Partition List
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Gypsum
Storage
Frequently Asked Questions
Connecting to Unity
SSH
Unity OnDemand
Connecting to Desktop VS Code
Managing Files
Command Line Interface (CLI)
Disk Quotas
FileZilla
Globus
Scratch: HPC Workspace
Unity OnDemand File Browser
Submitting Jobs
Batch Jobs
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Array Batch Jobs
Large Job Counts
Monitor a batch job
Helper Scripts
Interactive CLI Jobs
Unity OnDemand
Message Passing Interface (MPI)
Slurm cheat sheet
Software Management
Conda
Modules
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Module Usage
Renv
Unity OnDemand
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JupyterLab OnDemand
Venv
Tools & Software
ColabFold
R
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R Parallelization
Unity GPUs
Datasets
AI and ML
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Code Llama
Imagenet
Imagenet 1K
LAION
Llama2
mixtral
Bioinformatics
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AlphaFold Databases
AlphaFold3 Databases
BFD/MGnify
Big Fantastic Database
checkm
ColabFoldDB
dfam
EggNOG
GTDB
Kraken2
MGnify
NCBI BLAST databases
NCBI RefSeq database
PDB70
PDB70 for ColabFold
PINDER
PLINDER
Protein Data Bank
Protein Data Bank database in mmCIF format
Protein Data Bank database in SEQRES records
Tara Oceans 18S amplicon
Tara Oceans MATOU gene catalog
Tara Oceans MGT transcriptomes
Uniclust30
UniProtKB
UniRef100
UniRef100 BLAST database
UniRef30
UniRef90
Documentation
Requesting An Account
Get Started
Common Terms
HPC Resources
Quick Start
Theory of HPC
expand_more
chevron_right
Overview of threads, cores, and sockets in Slurm for HPC workflows
Cluster Specifications
Node Features (Constraints)
expand_more
chevron_right
NVLink and NVSwitch
Node List
Partition List
expand_more
chevron_right
Gypsum
Storage
Frequently Asked Questions
Connecting to Unity
SSH
Unity OnDemand
Connecting to Desktop VS Code
Managing Files
Command Line Interface (CLI)
Disk Quotas
FileZilla
Globus
Scratch: HPC Workspace
Unity OnDemand File Browser
Submitting Jobs
Batch Jobs
expand_more
chevron_right
Array Batch Jobs
Large Job Counts
Monitor a batch job
Helper Scripts
Interactive CLI Jobs
Unity OnDemand
Message Passing Interface (MPI)
Slurm cheat sheet
Software Management
Conda
Modules
expand_more
chevron_right
Module Usage
Renv
Unity OnDemand
expand_more
chevron_right
JupyterLab OnDemand
Venv
Tools & Software
ColabFold
R
expand_more
chevron_right
R Parallelization
Unity GPUs
Datasets
AI and ML
expand_more
chevron_right
Code Llama
Imagenet
Imagenet 1K
LAION
Llama2
mixtral
Bioinformatics
expand_more
chevron_right
AlphaFold Databases
AlphaFold3 Databases
BFD/MGnify
Big Fantastic Database
checkm
ColabFoldDB
dfam
EggNOG
GTDB
Kraken2
MGnify
NCBI BLAST databases
NCBI RefSeq database
PDB70
PDB70 for ColabFold
PINDER
PLINDER
Protein Data Bank
Protein Data Bank database in mmCIF format
Protein Data Bank database in SEQRES records
Tara Oceans 18S amplicon
Tara Oceans MATOU gene catalog
Tara Oceans MGT transcriptomes
Uniclust30
UniProtKB
UniRef100
UniRef100 BLAST database
UniRef30
UniRef90
Unity
Documentation
Get Started
Get Started with HPC and Unity
Articles in Get Started
description
Common Terms
Definitions for common terms used in the Unity documentation.
book
HPC Resources
Recommended external resources for getting started with and using HPC systems.
description
Quick Start
Quick Start Guide to HPC and Unity
book
Theory of HPC
Learn about the theory of HPC to support your work on Unity.
Last modified: Sunday, July 21, 2024 at 10:09 PM.
See the commit on GitLab.
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